miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18255 + 5659 89 24.5 -26 NP_817460 5' arm      3' arm
18303 + 33542 88 19.5 -26 NP_817486 5' arm      3' arm
18267 + 13492 90 19 -25.9 NP_817470 5' arm      3' arm
18442 - 33662 89 21 -25.9 NP_817486 5' arm      3' arm
18295 + 29553 88 19 -25.9 NP_817479 5' arm      3' arm
18385 - 12660 90 20.5 -25.9 5' arm      3' arm
18274 + 16399 88 22 -25.9 NP_817472 5' arm      3' arm
18514 - 62595 90 23 -25.9 NP_817553 5' arm      3' arm
18330 + 60004 85 19 -25.8 NP_817549 5' arm      3' arm
18319 + 46773 87 19.5 -25.8 NP_817519 5' arm      3' arm
18360 - 1813 87 21 -25.8 NP_817456 5' arm      3' arm
18276 + 17139 86 23 -25.7 NP_817472 5' arm      3' arm
18305 + 34602 88 20.5 -25.6 NP_817489 5' arm      3' arm
18423 - 25727 90 23 -25.5 NP_817477 5' arm      3' arm
18288 + 26316 89 19.5 -25.5 NP_817477 5' arm      3' arm
18486 - 51396 86 22.5 -25.5 NP_817531 5' arm      3' arm
18403 - 19456 87 23.5 -25.5 NP_817473 5' arm      3' arm
18326 + 56047 87 20 -25.5 NP_817542 5' arm      3' arm
18472 - 46461 87 21 -25.4 NP_817518 5' arm      3' arm
18358 - 581 90 22 -25.4 NP_817451 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.