miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38640309 NC_005262.1 Burkholderia cepacia phage Bcep22

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
24098 - 59122 90 23.5 -25.9 NP_944303 5' arm      3' arm
23861 + 1470 87 21 -25.8 NP_944234 5' arm      3' arm
24031 - 31486 89 24.5 -25.7 5' arm      3' arm
24038 - 33354 90 23 -25.7 NP_944286 5' arm      3' arm
24033 - 31813 89 20 -25.7 NP_944284 5' arm      3' arm
23869 + 3648 90 22.5 -25.6 NP_944235 5' arm      3' arm
23977 - 5702 88 20 -25.6 NP_944238 5' arm      3' arm
24042 - 35602 89 21 -25.5 NP_944290 5' arm      3' arm
24020 - 27964 89 20.5 -25.4 NP_944280 5' arm      3' arm
24044 - 37341 88 20 -25.4 NP_944291 5' arm      3' arm
23919 + 28446 90 20 -25.3 NP_944280 5' arm      3' arm
24086 - 55928 90 19 -25.1 NP_944303 5' arm      3' arm
24096 - 58510 90 21.5 -25.1 NP_944303 5' arm      3' arm
23960 + 55914 83 19.5 -25.1 NP_944303 5' arm      3' arm
24002 - 20706 88 20 -25 NP_944264 5' arm      3' arm
23990 - 15036 88 22.5 -25 NP_944256 5' arm      3' arm
24067 - 48652 89 21.5 -24.9 NP_944303 5' arm      3' arm
23985 - 12223 90 19.5 -24.9 NP_944250 5' arm      3' arm
24077 - 53530 84 20 -24.9 NP_944303 5' arm      3' arm
24050 - 40733 87 25 -24.9 NP_944294 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.