miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38707890 NC_005284.1 Bacteriophage phi1026b

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
24808 + 1103 89 20 -23.2 NP_945032 5' arm      3' arm
24889 + 46302 90 21 -23.1 NP_945098 5' arm      3' arm
24850 + 23195 89 21 -23.1 NP_945058 5' arm      3' arm
24963 - 48876 87 20 -23.1 NP_945102 5' arm      3' arm
24883 + 41356 87 20.5 -23 NP_945089 5' arm      3' arm
24972 - 54651 88 19 -23 NP_945113 5' arm      3' arm
24918 - 11419 90 21 -22.9 NP_945044 5' arm      3' arm
24863 + 30775 89 19 -22.9 NP_945069 5' arm      3' arm
24854 + 25017 90 22.5 -22.8 NP_945060 5' arm      3' arm
24927 - 18312 90 25.5 -22.8 NP_945050 5' arm      3' arm
24846 + 19374 86 22 -22.8 NP_945050 5' arm      3' arm
24953 - 39698 80 22 -22.8 5' arm      3' arm
24955 - 41096 90 19 -22.7 NP_945089 5' arm      3' arm
24914 - 10376 87 21.5 -22.6 NP_945044 5' arm      3' arm
24862 + 30680 90 20 -22.6 NP_945069 5' arm      3' arm
24872 + 35182 90 22 -22.5 NP_945077 5' arm      3' arm
24843 + 16928 87 19.5 -22.4 NP_945050 5' arm      3' arm
24859 + 27494 90 20.5 -22.2 NP_945063 5' arm      3' arm
24937 - 24846 90 19 -22.2 NP_945060 5' arm      3' arm
24962 - 48507 87 21 -22.2 NP_945102 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.