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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23837 | - | 118318 | 89 | 22.5 | -26.8 | NP_954957 | 5' arm 3' arm | ||
| 23702 | + | 130962 | 85 | 20.5 | -26.8 | 5' arm 3' arm | |||
| 23616 | + | 57804 | 90 | 23.5 | -26.7 | NP_954920 | 5' arm 3' arm | ||
| 23738 | - | 26202 | 87 | 21.5 | -26.7 | NP_954908 | 5' arm 3' arm | ||
| 23614 | + | 56025 | 90 | 20.5 | -26.6 | NP_954919 | 5' arm 3' arm | ||
| 23724 | - | 21539 | 83 | 19 | -26.5 | NP_954905 | 5' arm 3' arm | ||
| 23802 | - | 85934 | 87 | 20.5 | -26.5 | NP_954937 | 5' arm 3' arm | ||
| 23810 | - | 93001 | 87 | 20.5 | -26.4 | NP_954941 | 5' arm 3' arm | ||
| 23661 | + | 97483 | 90 | 22.5 | -26.3 | NP_954943 | 5' arm 3' arm | ||
| 23701 | + | 129713 | 86 | 25.5 | -26.3 | 5' arm 3' arm | |||
| 23828 | - | 113300 | 86 | 25.5 | -26.3 | 5' arm 3' arm | |||
| 23761 | - | 55713 | 87 | 23.5 | -26.3 | NP_954919 | 5' arm 3' arm | ||
| 23775 | - | 68123 | 89 | 19.5 | -26.2 | NP_954926 | 5' arm 3' arm | ||
| 23747 | - | 37946 | 89 | 19 | -26.2 | NP_954911 | 5' arm 3' arm | ||
| 23822 | - | 100337 | 89 | 19 | -26.2 | NP_954947 | 5' arm 3' arm | ||
| 23579 | + | 24189 | 86 | 19.5 | -26.2 | NP_954907 | 5' arm 3' arm | ||
| 23849 | - | 125603 | 90 | 21.5 | -26.2 | NP_954961 | 5' arm 3' arm | ||
| 23845 | - | 121554 | 88 | 20.5 | -26.1 | NP_954959 | 5' arm 3' arm | ||
| 23662 | + | 99252 | 89 | 22 | -26 | NP_954946 | 5' arm 3' arm | ||
| 23657 | + | 95427 | 90 | 20 | -26 | NP_954942 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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