miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
57753388 NC_006646.1 Cotesia congregata virus segment Circle14

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31454 - 1350 90 32.5 -25.2 5' arm      3' arm
31402 + 9301 90 22.5 -25.1 5' arm      3' arm
31490 - 13138 87 23 -25.1 YP_184868 5' arm      3' arm
31403 + 12314 90 22.5 -25.1 5' arm      3' arm
31430 + 19726 88 23 -25.06 YP_184796 5' arm      3' arm
31522 - 11036 90 22.5 -25 5' arm      3' arm
31459 - 823 86 22.5 -24.9 5' arm      3' arm
31489 - 11215 87 26 -24.7 5' arm      3' arm
31525 + 10780 87 26 -24.7 5' arm      3' arm
31517 - 10672 90 23.5 -24.5 5' arm      3' arm
31441 + 3599 79 22 -24.4 5' arm      3' arm
31518 + 5190 87 24.5 -24.3 5' arm      3' arm
31426 + 11118 89 25 -24.2 YP_184790 5' arm      3' arm
31461 - 5599 87 26 -24.1 5' arm      3' arm
31495 - 10639 89 29.5 -23.9 5' arm      3' arm
31521 - 6814 89 25.5 -23.9 5' arm      3' arm
31410 - 13030 89 28 -23.9 5' arm      3' arm
31451 + 1266 90 24.5 -23.84 5' arm      3' arm
31485 - 753 90 19.5 -23.3 5' arm      3' arm
31496 + 1350 90 28 -23.3 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.