miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
30001	-	23734	88	19.5	-29.1	YP_081476		5' arm      3' arm
1939	-	122794	87	19	-29	NP_040019		5' arm      3' arm
30132	-	123167	87	19	-29	YP_081532		5' arm      3' arm
1657	+	111869	87	25	-28.9	NP_040010		5' arm      3' arm
1901	-	75032	89	21.5	-28.9	NP_039986		5' arm      3' arm
29933	+	174335	90	19.5	-28.9	YP_081563		5' arm      3' arm
1632	+	94903	89	21	-28.9			5' arm      3' arm
1758	+	173947	90	19.5	-28.9	NP_040061		5' arm      3' arm
30013	-	31499	89	21.5	-28.9	YP_081484		5' arm      3' arm
30042	-	45446	89	22	-28.8	YP_081493		5' arm      3' arm
1851	-	45098	89	22	-28.8	NP_783782		5' arm      3' arm
29759	+	48083	90	19	-28.7	YP_081494		5' arm      3' arm
1539	+	4532	90	25	-28.7			5' arm      3' arm
1589	+	49490	85	26.5	-28.7
2001	-	185866	90	25	-28.7			5' arm      3' arm
29762	+	49840	85	26.5	-28.7			5' arm
30031	-	39607	89	24.5	-28.6	YP_081490		5' arm      3' arm
1894	-	71699	90	20	-28.6	NP_039983		5' arm      3' arm
1841	-	39261	89	24.5	-28.6	NP_783780		5' arm      3' arm
1585	+	47735	87	20	-28.6	NP_039969		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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