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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 11081 | - | 110544 | 85 | 21 | -26.6 | 5' arm 3' arm | |||
| 10742 | + | 62671 | 90 | 19.5 | -26.5 | NP_116386 | 5' arm 3' arm | ||
| 10754 | + | 76876 | 88 | 20 | -26.5 | NP_116400 | 5' arm 3' arm | ||
| 10760 | + | 87159 | 89 | 21 | -26.5 | NP_116403 | 5' arm 3' arm | ||
| 11004 | - | 74053 | 88 | 21 | -26.5 | NP_116398 | 5' arm 3' arm | ||
| 10743 | + | 64150 | 85 | 20.5 | -26.5 | NP_116387 | 5' arm 3' arm | ||
| 10786 | + | 112066 | 87 | 19.5 | -26.4 | NP_116418 | 5' arm 3' arm | ||
| 11029 | - | 86647 | 87 | 20 | -26.4 | NP_116403 | 5' arm 3' arm | ||
| 10940 | - | 37463 | 90 | 19.5 | -26.4 | 5' arm 3' arm | |||
| 11139 | - | 185017 | 84 | 19 | -26.4 | NP_116477 | 5' arm 3' arm | ||
| 11048 | - | 95895 | 87 | 19.5 | -26.4 | NP_116408 | 5' arm 3' arm | ||
| 11026 | - | 85851 | 89 | 21 | -26.3 | 5' arm 3' arm | |||
| 11067 | - | 102961 | 88 | 19 | -26.3 | NP_116411 | 5' arm 3' arm | ||
| 10820 | + | 131659 | 90 | 24 | -26.3 | NP_116432 | 5' arm 3' arm | ||
| 11052 | - | 97677 | 90 | 21 | -26.3 | NP_116409 | 5' arm 3' arm | ||
| 10995 | - | 69180 | 89 | 19 | -26.3 | NP_116396 | 5' arm 3' arm | ||
| 10986 | - | 63609 | 88 | 20.5 | -26.3 | NP_116386 | 5' arm 3' arm | ||
| 11084 | - | 115616 | 89 | 21.5 | -26.3 | NP_116420 | 5' arm 3' arm | ||
| 11065 | - | 102220 | 86 | 23.5 | -26.3 | NP_116411 | 5' arm 3' arm | ||
| 10893 | + | 177556 | 87 | 21 | -26.2 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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