miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26523 + 30548 89 20.5 -23.3 NP_958700 5' arm      3' arm
26536 + 40367 90 19.5 -23.2 NP_958716 5' arm      3' arm
26518 + 26842 90 20 -23.2 NP_958697 5' arm      3' arm
26494 + 17778 90 19 -23.2 NP_958683 5' arm      3' arm
26596 - 34960 88 23 -23.2 NP_958707 5' arm      3' arm
26495 + 18408 90 22.5 -23.1 NP_958685 5' arm      3' arm
26503 + 20254 89 26 -23.1 NP_958687 5' arm      3' arm
26459 + 6247 85 20 -23.1 NP_958679 5' arm      3' arm
26614 - 39056 88 20.5 -22.9 NP_958713 5' arm      3' arm
26445 + 1656 90 22 -22.9 NP_958674 5' arm      3' arm
26490 + 16704 84 21 -22.8 NP_958682 5' arm      3' arm
26603 - 36248 88 24.5 -22.7 5' arm      3' arm
26442 + 823 88 19 -22.7 NP_958672 5' arm      3' arm
26568 - 23571 87 20.5 -22.7 NP_958692 5' arm      3' arm
26447 + 2545 90 24 -22.6 NP_958675 5' arm      3' arm
26471 + 11890 90 23.5 -22.6 NP_958679 5' arm      3' arm
26605 - 36860 87 22 -22.6 NP_958711 5' arm      3' arm
26582 - 30335 88 22 -22.5 NP_958699 5' arm      3' arm
26543 - 3090 90 20.5 -22.5 NP_958676 5' arm      3' arm
26598 - 35535 90 25.5 -22.4 NP_958708 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.