miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38640309 NC_005262.1 Burkholderia cepacia phage Bcep22

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23883 + 7699 89 21.5 -24.8 NP_944241 5' arm      3' arm
23858 + 116 90 22 -24.7 NP_944231 5' arm      3' arm
23874 + 4982 90 21 -24.7 NP_944238 5' arm      3' arm
23955 + 52218 90 19.5 -24.7 NP_944303 5' arm      3' arm
24078 - 53869 90 20.5 -24.6 NP_944303 5' arm      3' arm
24006 - 23111 89 23 -24.6 NP_944269 5' arm      3' arm
23943 + 43735 90 19 -24.6 NP_944297 5' arm      3' arm
23898 + 15691 90 20.5 -24.5 NP_944257 5' arm      3' arm
23986 - 12546 90 22.5 -24.5 NP_944250 5' arm      3' arm
23897 + 15267 88 20 -24.5 NP_944256 5' arm      3' arm
24047 - 40013 88 20 -24.4 5' arm      3' arm
24082 - 54594 90 21 -24.3 NP_944303 5' arm      3' arm
24073 - 51836 87 21.5 -24.2 NP_944303 5' arm      3' arm
23923 + 32282 90 21.5 -24.2 NP_944284 5' arm      3' arm
23947 + 45816 90 23.5 -24.2 NP_944301 5' arm      3' arm
23862 + 1844 89 24.5 -24.1 NP_944234 5' arm      3' arm
23866 + 2847 89 21 -24.1 NP_944235 5' arm      3' arm
24004 - 21409 88 22.5 -24 NP_944265 5' arm      3' arm
23901 + 18021 90 21 -24 NP_944260 5' arm      3' arm
24021 - 28329 89 24 -23.92 NP_944280 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.