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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23790 | - | 78477 | 89 | 20.5 | -26 | NP_954932 | 5' arm 3' arm | ||
| 23662 | + | 99252 | 89 | 22 | -26 | NP_954946 | 5' arm 3' arm | ||
| 23665 | + | 100258 | 89 | 19.5 | -25.9 | NP_954947 | 5' arm 3' arm | ||
| 23730 | - | 23165 | 87 | 19 | -25.9 | NP_954906 | 5' arm 3' arm | ||
| 23713 | - | 9522 | 90 | 24 | -25.9 | NP_954897 | 5' arm 3' arm | ||
| 23760 | - | 54530 | 87 | 19.5 | -25.8 | NP_954919 | 5' arm 3' arm | ||
| 23643 | + | 83169 | 90 | 21.5 | -25.8 | NP_954935 | 5' arm 3' arm | ||
| 23842 | - | 120215 | 89 | 20 | -25.8 | NP_954958 | 5' arm 3' arm | ||
| 23596 | + | 45111 | 90 | 21 | -25.7 | NP_954915 | 5' arm 3' arm | ||
| 23770 | - | 63064 | 90 | 21 | -25.7 | NP_954923 | 5' arm 3' arm | ||
| 23722 | - | 19068 | 89 | 21 | -25.6 | NP_954903 | 5' arm 3' arm | ||
| 23587 | + | 29616 | 89 | 21 | -25.5 | NP_954910 | 5' arm 3' arm | ||
| 23795 | - | 81909 | 90 | 20.5 | -25.5 | NP_954931 | 5' arm 3' arm | ||
| 23686 | + | 119588 | 90 | 22.5 | -25.5 | NP_954958 | 5' arm 3' arm | ||
| 23600 | + | 47168 | 88 | 22 | -25.41 | NP_954917 | 5' arm 3' arm | ||
| 23633 | + | 73119 | 87 | 19 | -25.4 | NP_954929 | 5' arm 3' arm | ||
| 23580 | + | 24278 | 90 | 20.5 | -25.4 | NP_954907 | 5' arm 3' arm | ||
| 23772 | - | 64502 | 88 | 21.5 | -25.3 | NP_954924 | 5' arm 3' arm | ||
| 23773 | - | 66652 | 90 | 19 | -25.3 | NP_954926 | 5' arm 3' arm | ||
| 23719 | - | 14295 | 86 | 21 | -25.3 | NP_954901 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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