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| GenBank Identifier | RefSeq Acc. | Name |
| 52139181 | NC_006273.1 | Human herpesvirus 5 (wild type strain Merlin) |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 30031 | - | 39607 | 89 | 24.5 | -28.6 | YP_081490 | 5' arm 3' arm | ||
| 2042 | - | 221478 | 82 | 19.5 | -28.5 | NP_040114 | hcmv-mir-US33 | ||
| 1558 | + | 34069 | 88 | 20 | -28.5 | NP_039961 | 5' arm 3' arm | ||
| 30007 | - | 28630 | 89 | 22 | -28.5 | YP_081482 | 5' arm 3' arm | ||
| 1820 | - | 28287 | 89 | 22 | -28.5 | NP_783777 | 5' arm 3' arm | ||
| 29770 | + | 60551 | 88 | 19 | -28.5 | YP_081503 | 5' arm 3' arm | ||
| 1597 | + | 60192 | 88 | 19 | -28.5 | NP_039979 | 5' arm 3' arm | ||
| 30242 | - | 226780 | 82 | 19.5 | -28.5 | YP_081613 | #hcmv-mir-US33 | 5' arm | |
| 1544 | + | 19515 | 86 | 21 | -28.4 | NP_039947 | 5' arm 3' arm | ||
| 2033 | - | 213932 | 87 | 20 | -28.4 | NP_040108 | 5' arm 3' arm | ||
| 29812 | + | 99589 | 89 | 23.5 | -28.3 | YP_081517 | 5' arm 3' arm | ||
| 1790 | + | 213076 | 90 | 24.5 | -28.3 | NP_040108 | 5' arm 3' arm | ||
| 29969 | + | 218372 | 90 | 24.5 | -28.3 | YP_081608 | 5' arm 3' arm | ||
| 1826 | - | 31156 | 89 | 21.5 | -28.2 | NP_039959 | 5' arm 3' arm | ||
| 1811 | - | 19593 | 90 | 21 | -28.2 | NP_039947 | 5' arm 3' arm | ||
| 29719 | + | 790 | 88 | 26.5 | -28.2 | 5' arm 3' arm | |||
| 30202 | - | 194878 | 88 | 26.5 | -28.2 | 5' arm 3' arm | |||
| 29827 | + | 105266 | 87 | 20 | -28.2 | YP_081519 | 5' arm 3' arm | ||
| 2045 | - | 222416 | 90 | 20.5 | -28.1 | NP_040114 | 5' arm 3' arm | ||
| 30244 | - | 227718 | 90 | 20.5 | -28.1 | YP_081613 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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