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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15661 | + | 564 | 90 | 27.5 | -26.8 | YP_214009 | 5' arm 3' arm | ||
| 16050 | - | 81222 | 89 | 21.5 | -26.8 | 5' arm 3' arm | |||
| 16088 | - | 107503 | 88 | 23 | -26.8 | YP_214078 | 5' arm 3' arm | ||
| 16164 | - | 162871 | 81 | 19 | -26.8 | 5' arm 3' arm | |||
| 16094 | - | 109991 | 90 | 19 | -26.7 | YP_214080 | 5' arm 3' arm | ||
| 16009 | - | 59735 | 88 | 20.5 | -26.7 | YP_214057 | 5' arm 3' arm | ||
| 16005 | - | 56035 | 89 | 22.5 | -26.62 | YP_214055 | 5' arm 3' arm | ||
| 16154 | - | 149821 | 90 | 20.5 | -26.6 | YP_214104 | 5' arm 3' arm | ||
| 15681 | + | 27507 | 90 | 20 | -26.5 | YP_214034 | 5' arm 3' arm | ||
| 15784 | + | 96947 | 89 | 25 | -26.5 | YP_214071 | 5' arm 3' arm | ||
| 15760 | + | 82098 | 88 | 21 | -26.5 | 5' arm 3' arm | |||
| 16169 | - | 167901 | 84 | 19 | -26.4 | YP_214111 | 5' arm 3' arm | ||
| 16053 | - | 83285 | 79 | 19.5 | -26.4 | YP_214067 | 5' arm 3' arm | ||
| 15822 | + | 126265 | 89 | 24 | -26.3 | 5' arm 3' arm | |||
| 16146 | - | 146222 | 90 | 20.5 | -26.3 | YP_214102 | 5' arm 3' arm | ||
| 16210 | - | 200455 | 87 | 21.5 | -26.3 | YP_214142 | 5' arm 3' arm | ||
| 15746 | + | 73138 | 85 | 19 | -26.3 | 5' arm 3' arm | |||
| 16151 | - | 148585 | 87 | 20.5 | -26.3 | YP_214103 | 5' arm 3' arm | ||
| 16025 | - | 66519 | 90 | 22 | -26.2 | 5' arm 3' arm | |||
| 15712 | + | 53087 | 90 | 20.5 | -26.2 | YP_214051 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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