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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 10756 | + | 84431 | 88 | 19.5 | -26.1 | NP_116401 | 5' arm 3' arm | ||
| 11127 | - | 174619 | 89 | 19 | -26.1 | 5' arm 3' arm | |||
| 11039 | - | 92802 | 90 | 19.5 | -26.1 | NP_116408 | 5' arm 3' arm | ||
| 10764 | + | 93739 | 89 | 19.5 | -26 | NP_116408 | 5' arm 3' arm | ||
| 10861 | + | 159126 | 89 | 22 | -26 | NP_116451 | 5' arm 3' arm | ||
| 10837 | + | 138877 | 90 | 19 | -26 | NP_116435 | 5' arm 3' arm | ||
| 10876 | + | 165796 | 90 | 20.5 | -26 | NP_116455 | 5' arm 3' arm | ||
| 11136 | - | 182940 | 90 | 22 | -26 | NP_116475 | 5' arm 3' arm | ||
| 10989 | - | 64730 | 85 | 19.5 | -25.9 | NP_116387 | 5' arm 3' arm | ||
| 10834 | + | 138359 | 90 | 20 | -25.9 | NP_116435 | 5' arm 3' arm | ||
| 11126 | - | 173105 | 85 | 22.5 | -25.9 | NP_116464 | 5' arm 3' arm | ||
| 10874 | + | 165285 | 90 | 22.5 | -25.8 | NP_116454 | 5' arm 3' arm | ||
| 10879 | + | 168169 | 88 | 25.5 | -25.8 | NP_116457 | 5' arm 3' arm | ||
| 10831 | + | 136419 | 89 | 25 | -25.8 | NP_116435 | 5' arm 3' arm | ||
| 10790 | + | 114267 | 90 | 21.5 | -25.8 | NP_116420 | 5' arm 3' arm | ||
| 10713 | + | 14368 | 88 | 21.5 | -25.8 | NP_116339 | 5' arm 3' arm | ||
| 10818 | + | 131193 | 87 | 19.5 | -25.7 | NP_116432 | 5' arm 3' arm | ||
| 10722 | + | 36243 | 89 | 20.5 | -25.6 | NP_116364 | 5' arm 3' arm | ||
| 11001 | - | 72950 | 90 | 19.5 | -25.6 | NP_116398 | 5' arm 3' arm | ||
| 10782 | + | 107977 | 90 | 23 | -25.5 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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