miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18521 - 66221 90 22.5 -24.6 NP_817562 5' arm      3' arm
18322 + 52840 80 20.5 -24.6 NP_817533 5' arm      3' arm
18519 - 64835 90 19.5 -24.6 NP_817560 5' arm      3' arm
18446 - 35959 88 22 -24.5 NP_817493 5' arm      3' arm
18462 - 42088 88 21.5 -24.4 NP_817508 5' arm      3' arm
18265 + 11592 90 19 -24.4 NP_817468 5' arm      3' arm
18377 - 10566 89 23 -24.3 NP_817465 5' arm      3' arm
18456 - 40587 88 20 -24.3 NP_817504 5' arm      3' arm
18513 - 62146 86 22.5 -24.3 NP_817552 5' arm      3' arm
18364 - 4453 86 19.5 -24.2 NP_817458 5' arm      3' arm
18429 - 28562 89 22.5 -24.2 NP_817478 5' arm      3' arm
18299 + 30654 90 19.5 -24.1 NP_817482 5' arm      3' arm
18409 - 21241 87 21.5 -24.1 NP_817474 5' arm      3' arm
18457 - 40747 89 20 -24.1 NP_817504 5' arm      3' arm
18323 + 53873 90 21 -24 NP_817537 5' arm      3' arm
18482 - 50729 90 22 -24 NP_817529 5' arm      3' arm
18252 + 3051 90 19 -24 NP_817458 5' arm      3' arm
18538 - 75733 87 23.5 -23.9 5' arm      3' arm
18411 - 21602 88 22 -23.9 NP_817474 5' arm      3' arm
18489 - 52091 90 21 -23.9 NP_817531 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.