miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
28013	+	9090	89	20	-22.3	YP_024932		5' arm      3' arm
28000	+	1937	88	19	-22.1	YP_024923		5' arm      3' arm
28034	+	19203	86	21.5	-22.1	YP_024938		5' arm      3' arm
28076	+	33185	89	21	-22			5' arm      3' arm
28030	+	17778	89	24.5	-22	YP_024937		5' arm      3' arm
28121	-	7884	90	19.5	-22	YP_024930		5' arm      3' arm
28027	+	16288	89	21.5	-21.9	YP_024936		5' arm      3' arm
28120	-	7564	86	20.5	-21.9	YP_024929		5' arm      3' arm
27997	+	1390	86	19.5	-21.9	YP_024923		5' arm      3' arm
28159	-	26977	85	22	-21.9	YP_024948		5' arm      3' arm
28071	+	31569	90	19.5	-21.9	YP_024953		5' arm      3' arm
28046	+	24625	90	21.5	-21.8	YP_024945		5' arm      3' arm
28038	+	21964	86	19	-21.8	YP_024939		5' arm      3' arm
28097	+	40288	89	20.5	-21.8	YP_024966		5' arm      3' arm
28176	-	38096	85	19.5	-21.7			5' arm      3' arm
28082	+	35260	88	23.5	-21.7	YP_024959		5' arm      3' arm
28142	-	17505	87	19.5	-21.6	YP_024937		5' arm      3' arm
28128	-	12473	90	23	-21.6	YP_024935		5' arm      3' arm
28144	-	18485	87	20	-21.4	YP_024937		5' arm      3' arm
28103	+	42298	90	20.5	-21.4	YP_024966		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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