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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29003 | - | 33564 | 77 | 20.5 | -26.1 | 5' arm 3' arm | |||
| 28983 | - | 25412 | 89 | 21 | -26.1 | 5' arm 3' arm | |||
| 28948 | - | 13088 | 89 | 21 | -26.1 | 5' arm 3' arm | |||
| 28974 | - | 22331 | 89 | 21 | -26.1 | 5' arm 3' arm | |||
| 28908 | + | 153336 | 90 | 19.5 | -26 | YP_068009 | 5' arm 3' arm | ||
| 29093 | - | 121316 | 88 | 21 | -26 | YP_067995 | 5' arm 3' arm | ||
| 28805 | + | 66045 | 83 | 23.5 | -25.91 | YP_067958 | 5' arm 3' arm | ||
| 28799 | + | 61451 | 89 | 21.5 | -25.9 | YP_067955 | 5' arm 3' arm | ||
| 28941 | - | 8196 | 86 | 22.5 | -25.9 | 5' arm 3' arm | |||
| 29148 | - | 161995 | 85 | 22 | -25.9 | 5' arm 3' arm | |||
| 28895 | + | 144591 | 78 | 24 | -25.9 | 5' arm 3' arm | |||
| 29017 | - | 54381 | 90 | 20 | -25.9 | YP_067951 | 5' arm 3' arm | ||
| 28780 | + | 48203 | 90 | 21 | -25.9 | YP_067950 | 5' arm 3' arm | ||
| 28924 | + | 162144 | 89 | 21.5 | -25.8 | 5' arm 3' arm | |||
| 29122 | - | 143643 | 90 | 24.5 | -25.72 | 5' arm 3' arm | |||
| 28899 | + | 146687 | 90 | 19 | -25.7 | YP_068005 | 5' arm 3' arm | ||
| 29020 | - | 56566 | 79 | 22.5 | -25.6 | YP_067951 | 5' arm 3' arm | ||
| 29101 | - | 128090 | 89 | 20.5 | -25.5 | YP_068000 | 5' arm 3' arm | ||
| 28905 | + | 149307 | 89 | 22 | -25.5 | YP_068007 | 5' arm 3' arm | ||
| 28980 | - | 24301 | 90 | 21 | -25.4 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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