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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23707 | - | 4355 | 89 | 22 | -24.6 | NP_954894 | 5' arm 3' arm | ||
| 23784 | - | 72993 | 87 | 19 | -24.6 | NP_954929 | 5' arm 3' arm | ||
| 23777 | - | 68679 | 89 | 19 | -24.6 | NP_954927 | 5' arm 3' arm | ||
| 23764 | - | 57306 | 90 | 21 | -24.6 | NP_954920 | 5' arm 3' arm | ||
| 23644 | + | 83352 | 88 | 21.5 | -24.6 | NP_954935 | 5' arm 3' arm | ||
| 23635 | + | 74655 | 90 | 19 | -24.5 | NP_954929 | 5' arm 3' arm | ||
| 23799 | - | 84469 | 89 | 19.5 | -24.5 | NP_954936 | 5' arm 3' arm | ||
| 23785 | - | 74080 | 89 | 20 | -24.4 | NP_954929 | 5' arm 3' arm | ||
| 23834 | - | 116249 | 90 | 22.5 | -24.4 | 5' arm 3' arm | |||
| 23680 | + | 115885 | 90 | 22 | -24.4 | 5' arm 3' arm | |||
| 23695 | + | 126764 | 90 | 22.5 | -24.4 | 5' arm 3' arm | |||
| 23851 | - | 127128 | 90 | 22 | -24.4 | 5' arm 3' arm | |||
| 23744 | - | 27985 | 88 | 19 | -24.3 | NP_954909 | 5' arm 3' arm | ||
| 23698 | + | 128808 | 87 | 22 | -24.3 | 5' arm 3' arm | |||
| 23831 | - | 114205 | 87 | 22 | -24.3 | 5' arm 3' arm | |||
| 23646 | + | 83991 | 90 | 22.5 | -24.2 | NP_954935 | 5' arm 3' arm | ||
| 23599 | + | 46927 | 90 | 21 | -24.2 | NP_954917 | 5' arm 3' arm | ||
| 23629 | + | 71769 | 86 | 22 | -24.2 | NP_954929 | |||
| 23839 | - | 119108 | 90 | 19.5 | -24.11 | NP_954957 | 5' arm 3' arm | ||
| 23748 | - | 39456 | 88 | 20 | -24.1 | NP_954911 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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