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| GenBank Identifier | RefSeq Acc. | Name |
| 38638196 | NC_005264.1 | Psittacid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 24457 | + | 92551 | 90 | 20 | -25.1 | NP_944423 | 5' arm 3' arm | ||
| 24603 | - | 55650 | 84 | 22 | -25.09 | NP_944408 | 5' arm 3' arm | ||
| 24579 | - | 34498 | 89 | 22.5 | -25 | 5' arm 3' arm | |||
| 24442 | + | 78577 | 90 | 21 | -25 | NP_944416 | 5' arm 3' arm | ||
| 24617 | - | 69258 | 89 | 20 | -25 | NP_944410 | 5' arm 3' arm | ||
| 24621 | - | 72218 | 87 | 21.5 | -24.9 | NP_944412 | 5' arm 3' arm | ||
| 24625 | - | 76750 | 90 | 22.5 | -24.8 | NP_944415 | 5' arm 3' arm | ||
| 24709 | - | 129390 | 87 | 24.5 | -24.8 | 5' arm 3' arm | |||
| 24526 | + | 152782 | 87 | 24.5 | -24.8 | 5' arm 3' arm | |||
| 24531 | + | 154754 | 88 | 20.5 | -24.8 | NP_944452 | 5' arm 3' arm | ||
| 24704 | - | 127418 | 88 | 20.5 | -24.8 | NP_944441 | 5' arm 3' arm | ||
| 24558 | - | 14744 | 87 | 19.5 | -24.8 | NP_944387 | 5' arm 3' arm | ||
| 24756 | - | 159733 | 90 | 23.5 | -24.7 | NP_944452 | 5' arm 3' arm | ||
| 24422 | + | 62908 | 88 | 20.5 | -24.7 | NP_944409 | 5' arm 3' arm | ||
| 24496 | + | 122439 | 90 | 23.5 | -24.7 | NP_944452 | 5' arm 3' arm | ||
| 24561 | - | 18574 | 89 | 20 | -24.6 | 5' arm 3' arm | |||
| 24333 | + | 1727 | 87 | 21.5 | -24.6 | 5' arm 3' arm | |||
| 24412 | + | 57427 | 90 | 23.5 | -24.6 | NP_944409 | 5' arm 3' arm | ||
| 24718 | - | 133639 | 87 | 22 | -24.6 | NP_944442 | 5' arm 3' arm | ||
| 24517 | + | 147630 | 90 | 21.5 | -24.6 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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