miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
2763	-	45928	88	20	-20.9			3' arm
2658	+	60139	90	19	-20.9	YP_053077		5' arm      3' arm
2676	+	82900	89	21	-20.8	YP_053089		5' arm      3' arm
2691	+	101070	90	22.5	-20.8	YP_053100		5' arm      3' arm
2640	+	20547	88	20	-20.8	YP_053060		5' arm      3' arm
2641	+	22674	89	23.5	-20.7	YP_053061		5' arm      3' arm
2679	+	86480	90	20	-20.7	YP_053091		5' arm      3' arm
2747	-	27555	87	20	-20.66	YP_053064		5' arm      3' arm
2655	+	54938	89	20	-20.6	YP_053075		5' arm      3' arm
2825	-	146994	90	20.5	-20.6	YP_053124		5' arm      3' arm
2635	+	8392	86	19.5	-20.6	YP_053052		5' arm      3' arm
2664	+	65277	89	21	-20.6	YP_053081		5' arm      3' arm
2702	+	116166	90	20.5	-20.6	YP_053124		5' arm      3' arm
2634	+	7496	89	22	-20.6	YP_053052		5' arm      3' arm
2670	+	75072	89	19	-20.5	YP_053086		5' arm      3' arm
2631	+	5675	89	19.5	-20.5	YP_053050		5' arm      3' arm
2727	+	148189	87	20	-20.4	YP_053124		5' arm      3' arm
2675	+	82800	90	22	-20.4	YP_053089		5' arm      3' arm
2633	+	7296	90	20.5	-20.4	YP_053052		5' arm      3' arm
2672	+	76292	89	20.5	-20.4			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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