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| GenBank Identifier | RefSeq Acc. | Name |
| 38638196 | NC_005264.1 | Psittacid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 24561 | - | 18574 | 89 | 20 | -24.6 | 5' arm 3' arm | |||
| 24622 | - | 74817 | 90 | 20 | -24.5 | NP_944413 | 5' arm 3' arm | ||
| 24443 | + | 82379 | 85 | 23 | -24.5 | NP_944418 | 5' arm 3' arm | ||
| 24339 | + | 5879 | 89 | 24.5 | -24.5 | NP_944381 | 5' arm 3' arm | ||
| 24611 | - | 64186 | 88 | 20 | -24.5 | NP_944409 | 5' arm 3' arm | ||
| 24454 | + | 89878 | 88 | 19 | -24.5 | NP_944421 | 5' arm 3' arm | ||
| 24467 | + | 102001 | 87 | 19.5 | -24.5 | NP_944430 | 5' arm 3' arm | ||
| 24606 | - | 57071 | 89 | 20 | -24.4 | NP_944409 | 5' arm 3' arm | ||
| 24684 | - | 115440 | 89 | 20 | -24.4 | NP_944437 | 5' arm 3' arm | ||
| 24580 | - | 34648 | 86 | 19 | -24.4 | NP_944397 | 5' arm 3' arm | ||
| 24397 | + | 47685 | 90 | 23 | -24.4 | 5' arm 3' arm | |||
| 24344 | + | 10106 | 90 | 20.5 | -24.4 | NP_944382 | 5' arm 3' arm | ||
| 24678 | - | 110453 | 90 | 20.5 | -24.3 | NP_944434 | 5' arm 3' arm | ||
| 24536 | + | 157910 | 90 | 19.5 | -24.3 | NP_944452 | 5' arm 3' arm | ||
| 24649 | - | 90848 | 87 | 19.5 | -24.3 | NP_944422 | 5' arm 3' arm | ||
| 24371 | + | 33657 | 89 | 22 | -24.3 | NP_944397 | 5' arm 3' arm | ||
| 24380 | + | 37942 | 90 | 24.5 | -24.2 | 5' arm 3' arm | |||
| 24360 | + | 24863 | 86 | 21 | -24.2 | NP_944391 | 5' arm 3' arm | ||
| 24508 | + | 133282 | 84 | 19.5 | -24.1 | NP_944442 | 5' arm 3' arm | ||
| 24427 | + | 65447 | 89 | 21.5 | -24.1 | NP_944409 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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