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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 10849 | + | 148586 | 83 | 20.5 | -20.3 | NP_116438 | 5' arm 3' arm | ||
| 10933 | - | 18775 | 89 | 21 | -20.4 | NP_116346 | 5' arm 3' arm | ||
| 11040 | - | 93014 | 90 | 19.5 | -20.4 | NP_116408 | 5' arm 3' arm | ||
| 10761 | + | 87673 | 88 | 21 | -20.5 | NP_116403 | 5' arm 3' arm | ||
| 10799 | + | 120212 | 89 | 22 | -20.5 | NP_116424 | 5' arm 3' arm | ||
| 10859 | + | 157399 | 90 | 20 | -20.5 | NP_116451 | 5' arm 3' arm | ||
| 10968 | - | 55453 | 88 | 20 | -20.5 | NP_116381 | 5' arm 3' arm | ||
| 10762 | + | 88195 | 89 | 20.5 | -20.5 | NP_116403 | 5' arm 3' arm | ||
| 10765 | + | 94622 | 88 | 20 | -20.5 | NP_116408 | 5' arm 3' arm | ||
| 10732 | + | 45209 | 89 | 19.5 | -20.5 | NP_116373 | 5' arm 3' arm | ||
| 10936 | - | 28147 | 90 | 29 | -20.52 | 5' arm 3' arm | |||
| 10871 | + | 163881 | 88 | 20 | -20.6 | NP_116454 | 5' arm 3' arm | ||
| 11079 | - | 109960 | 89 | 19.5 | -20.6 | NP_116415 | 5' arm 3' arm | ||
| 11035 | - | 92049 | 88 | 22 | -20.6 | NP_116407 | 5' arm 3' arm | ||
| 10729 | + | 43154 | 90 | 21 | -20.6 | NP_116370 | 5' arm 3' arm | ||
| 10825 | + | 134417 | 90 | 21 | -20.6 | NP_116434 | 5' arm 3' arm | ||
| 10844 | + | 145277 | 87 | 20.5 | -20.6 | NP_116441 | 5' arm 3' arm | ||
| 11123 | - | 165518 | 90 | 19 | -20.69 | 5' arm 3' arm | |||
| 10954 | - | 46732 | 88 | 19 | -20.7 | NP_116374 | 5' arm 3' arm | ||
| 11133 | - | 180803 | 90 | 20 | -20.7 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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