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| GenBank Identifier | RefSeq Acc. | Name |
| 52139181 | NC_006273.1 | Human herpesvirus 5 (wild type strain Merlin) |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29904 | + | 149417 | 90 | 23 | -19.8 | YP_081548 | 5' arm 3' arm | ||
| 29731 | + | 32857 | 87 | 19 | -19.9 | YP_081485 | 5' arm 3' arm | ||
| 1864 | - | 55553 | 90 | 19.5 | -19.9 | NP_783785 | 5' arm 3' arm | ||
| 1839 | - | 38460 | 90 | 21 | -19.9 | NP_783780 | 5' arm 3' arm | ||
| 30116 | - | 97768 | 88 | 21 | -19.9 | 5' arm 3' arm | |||
| 30017 | - | 33568 | 87 | 19 | -19.9 | YP_081486 | 5' arm 3' arm | ||
| 1554 | + | 32508 | 87 | 19 | -19.9 | NP_039960 | 5' arm 3' arm | ||
| 29928 | + | 169287 | 80 | 19 | -19.9 | 5' arm 3' arm | |||
| 1581 | + | 44910 | 90 | 22.5 | -19.9 | NP_783782 | 5' arm 3' arm | ||
| 1925 | - | 97388 | 90 | 20.5 | -19.9 | 5' arm 3' arm | |||
| 29757 | + | 45258 | 90 | 22.5 | -19.9 | YP_081493 | 5' arm 3' arm | ||
| 30149 | - | 145963 | 89 | 22 | -19.94 | YP_081546 | 5' arm 3' arm | ||
| 1959 | - | 145580 | 89 | 22 | -19.94 | NP_040034 | 5' arm 3' arm | ||
| 1750 | + | 168099 | 87 | 19.5 | -20 | NP_783795 | 5' arm 3' arm | ||
| 1848 | - | 43418 | 89 | 21 | -20 | NP_783781 | 5' arm 3' arm | ||
| 2051 | - | 227296 | 90 | 21.5 | -20 | NP_040122 | 5' arm 3' arm | ||
| 30067 | - | 64324 | 90 | 19.5 | -20 | YP_081505 | 5' arm 3' arm | ||
| 1876 | - | 63965 | 90 | 19.5 | -20 | NP_783786 | 5' arm 3' arm | ||
| 30158 | - | 152899 | 90 | 19 | -20 | YP_081550 | 5' arm 3' arm | ||
| 29849 | + | 120856 | 89 | 21.5 | -20 | YP_081531 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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