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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 11133 | - | 180803 | 90 | 20 | -20.7 | 5' arm 3' arm | |||
| 10842 | + | 144550 | 90 | 21 | -20.7 | 5' arm 3' arm | |||
| 10954 | - | 46732 | 88 | 19 | -20.7 | NP_116374 | 5' arm 3' arm | ||
| 11098 | - | 140151 | 87 | 21.5 | -20.7 | NP_116436 | 5' arm 3' arm | ||
| 10971 | - | 56173 | 90 | 20.5 | -20.8 | NP_116383 | 5' arm 3' arm | ||
| 10925 | - | 13773 | 87 | 19 | -20.8 | NP_116338 | 5' arm 3' arm | ||
| 10892 | + | 176823 | 87 | 21.5 | -20.9 | NP_116467 | 5' arm 3' arm | ||
| 10864 | + | 159919 | 87 | 23.5 | -20.9 | 5' arm 3' arm | |||
| 11041 | - | 93420 | 88 | 23.5 | -20.9 | NP_116408 | 5' arm 3' arm | ||
| 11112 | - | 152429 | 87 | 19 | -21 | NP_116445 | 5' arm 3' arm | ||
| 10985 | - | 63303 | 90 | 25 | -21.1 | NP_116386 | 5' arm 3' arm | ||
| 10832 | + | 136640 | 89 | 21 | -21.1 | NP_116435 | 5' arm 3' arm | ||
| 11131 | - | 177786 | 89 | 20 | -21.1 | NP_116468 | 5' arm 3' arm | ||
| 11053 | - | 97957 | 82 | 21.5 | -21.1 | NP_116409 | 5' arm 3' arm | ||
| 10705 | + | 5347 | 90 | 21 | -21.1 | NP_116332 | 5' arm 3' arm | ||
| 10766 | + | 95710 | 87 | 20.5 | -21.12 | NP_116408 | 5' arm 3' arm | ||
| 10961 | - | 50985 | 90 | 22.5 | -21.14 | NP_116379 | 5' arm 3' arm | ||
| 10912 | + | 192621 | 90 | 20.5 | -21.2 | 5' arm 3' arm | |||
| 10970 | - | 55861 | 87 | 20 | -21.3 | NP_116383 | 5' arm 3' arm | ||
| 10738 | + | 51204 | 88 | 19.5 | -21.3 | NP_116379 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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