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| GenBank Identifier | RefSeq Acc. | Name |
| 10834856 | NC_002577.1 | Gallid herpesvirus 3 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 9712 | - | 19189 | 90 | 21 | -22 | NP_066833 | 5' arm 3' arm | ||
| 9631 | + | 115679 | 90 | 21.5 | -22.2 | NP_066887 | 5' arm 3' arm | ||
| 9780 | - | 161776 | 89 | 19.5 | -22.2 | NP_066916 | 5' arm 3' arm | ||
| 9714 | - | 26772 | 81 | 19 | -22.2 | NP_066838 | 5' arm 3' arm | ||
| 9661 | + | 135695 | 89 | 19.5 | -22.2 | NP_066916 | 5' arm 3' arm | ||
| 9734 | - | 78098 | 90 | 21.5 | -22.24 | NP_066868 | 5' arm 3' arm | ||
| 9716 | - | 33242 | 87 | 21 | -22.3 | NP_066842 | 5' arm 3' arm | ||
| 9606 | + | 33298 | 90 | 21 | -22.4 | NP_066842 | 5' arm 3' arm | ||
| 9751 | - | 126954 | 90 | 24 | -22.5 | NP_066822 | 5' arm 3' arm | ||
| 9593 | + | 6629 | 90 | 24 | -22.5 | NP_066897 | 5' arm 3' arm | ||
| 9630 | + | 109707 | 89 | 20.5 | -22.56 | NP_066884 | 5' arm 3' arm | ||
| 9765 | - | 138336 | 89 | 19.5 | -22.6 | NP_066916 | 5' arm 3' arm | ||
| 9675 | + | 159135 | 89 | 19.5 | -22.6 | NP_066916 | 5' arm 3' arm | ||
| 9754 | - | 128942 | 90 | 19.5 | -22.66 | 5' arm 3' arm | |||
| 9590 | + | 4641 | 90 | 19.5 | -22.66 | 5' arm 3' arm | |||
| 9737 | - | 100901 | 90 | 25.5 | -22.7 | NP_066877 | 5' arm 3' arm | ||
| 9736 | - | 94190 | 90 | 21 | -22.9 | NP_066873 | 5' arm 3' arm | ||
| 9738 | - | 101376 | 90 | 21 | -22.9 | NP_066878 | 5' arm 3' arm | ||
| 9762 | - | 136684 | 89 | 21 | -23 | NP_066903 | 5' arm 3' arm | ||
| 9678 | + | 160787 | 89 | 21 | -23 | NP_066916 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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