miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
52139181 NC_006273.1 Human herpesvirus 5 (wild type strain Merlin)

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
30241 - 226400 89 20 -20 YP_081612 5' arm      3' arm
30067 - 64324 90 19.5 -20 YP_081505 5' arm      3' arm
29989 - 2344 89 20 -20 5' arm      3' arm
1876 - 63965 90 19.5 -20 NP_783786 5' arm      3' arm
1947 - 132295 82 19.5 -20.02 NP_040023 5' arm      3' arm
30140 - 135779 90 26 -20.1 YP_081539 5' arm      3' arm
29896 + 146574 87 20 -20.1 YP_081547 5' arm      3' arm
1600 + 65848 89 20 -20.1 NP_039982 5' arm      3' arm
29725 + 24298 85 20 -20.1 YP_081477 5' arm      3' arm
1879 - 64731 90 21.5 -20.1 NP_039982 5' arm      3' arm
29774 + 66207 89 20 -20.1 YP_081506 5' arm      3' arm
1949 - 135403 90 26 -20.1 NP_040027 5' arm      3' arm
30049 - 49268 86 21 -20.1 YP_081495 5' arm      3' arm
30070 - 65090 90 21.5 -20.1 YP_081506 5' arm      3' arm
30019 - 33821 90 22.5 -20.1 YP_081486 5' arm      3' arm
1830 - 33472 90 22.5 -20.1 NP_039961 5' arm      3' arm
1594 + 53547 88 21 -20.1 NP_039974 5' arm      3' arm
1548 + 23960 85 20 -20.1 NP_039952 5' arm      3' arm
2028 - 209898 89 20 -20.1 5' arm      3' arm
30231 - 215182 89 20 -20.1 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.