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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15663 | + | 2049 | 88 | 21.5 | -20.8 | 5' arm 3' arm | |||
| 15695 | + | 39571 | 89 | 21.5 | -20.8 | YP_214046 | 5' arm 3' arm | ||
| 16218 | - | 207866 | 88 | 22 | -20.8 | YP_214149 | 5' arm 3' arm | ||
| 15961 | - | 29717 | 90 | 19.5 | -20.8 | YP_214036 | 5' arm 3' arm | ||
| 16096 | - | 110983 | 88 | 20.5 | -20.8 | 5' arm 3' arm | |||
| 16166 | - | 164246 | 85 | 19 | -20.8 | 5' arm 3' arm | |||
| 16056 | - | 83783 | 87 | 19 | -20.8 | YP_214067 | 5' arm 3' arm | ||
| 16208 | - | 199046 | 90 | 22 | -20.9 | YP_214141 | 5' arm 3' arm | ||
| 16097 | - | 111927 | 87 | 19 | -20.9 | YP_214081 | 5' arm 3' arm | ||
| 15959 | - | 28073 | 90 | 22 | -20.9 | YP_214034 | 5' arm 3' arm | ||
| 16106 | - | 119226 | 90 | 20.5 | -20.9 | YP_214085 | 5' arm 3' arm | ||
| 15707 | + | 48200 | 90 | 24 | -20.9 | 5' arm 3' arm | |||
| 16103 | - | 115254 | 85 | 20.5 | -20.9 | YP_214083 | 5' arm 3' arm | ||
| 16120 | - | 130211 | 90 | 20.5 | -21 | 5' arm 3' arm | |||
| 16212 | - | 201912 | 82 | 24 | -21 | YP_214143 | 5' arm 3' arm | ||
| 15944 | - | 16926 | 90 | 24 | -21 | YP_214025 | 5' arm 3' arm | ||
| 16180 | - | 182946 | 90 | 20 | -21 | 5' arm 3' arm | |||
| 16109 | - | 120943 | 90 | 20.5 | -21 | YP_214086 | 5' arm 3' arm | ||
| 15889 | + | 187782 | 84 | 23 | -21.1 | YP_214131 | 5' arm 3' arm | ||
| 15797 | + | 108719 | 89 | 19 | -21.1 | YP_214079 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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