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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 11061 | - | 100648 | 89 | 21 | -21.4 | NP_116410 | 5' arm 3' arm | ||
| 11070 | - | 105793 | 89 | 22 | -21.4 | NP_116413 | 5' arm 3' arm | ||
| 10974 | - | 57416 | 89 | 22 | -21.4 | NP_116384 | 5' arm 3' arm | ||
| 11106 | - | 146792 | 90 | 19.5 | -21.4 | NP_116442 | 5' arm 3' arm | ||
| 10803 | + | 121312 | 87 | 21 | -21.4 | NP_116425 | 5' arm 3' arm | ||
| 10963 | - | 51831 | 89 | 21.5 | -21.4 | NP_116379 | 5' arm 3' arm | ||
| 10812 | + | 128484 | 89 | 21 | -21.4 | NP_116431 | 5' arm 3' arm | ||
| 10962 | - | 51415 | 90 | 19 | -21.4 | NP_116379 | 5' arm 3' arm | ||
| 10920 | - | 8072 | 89 | 20 | -21.5 | NP_116334 | 5' arm 3' arm | ||
| 11108 | - | 150568 | 75 | 20.5 | -21.5 | 5' arm 3' arm | |||
| 11036 | - | 92144 | 87 | 21 | -21.5 | NP_116407 | 5' arm 3' arm | ||
| 10773 | + | 102743 | 86 | 19 | -21.5 | NP_116411 | 5' arm 3' arm | ||
| 10944 | - | 39355 | 87 | 19 | -21.5 | NP_116368 | 5' arm 3' arm | ||
| 10824 | + | 134082 | 81 | 21 | -21.5 | NP_116434 | 5' arm 3' arm | ||
| 10747 | + | 70799 | 90 | 19 | -21.5 | NP_116397 | 5' arm 3' arm | ||
| 10988 | - | 64398 | 89 | 23.5 | -21.6 | NP_116387 | 5' arm 3' arm | ||
| 11102 | - | 143155 | 89 | 20 | -21.6 | NP_116437 | 5' arm 3' arm | ||
| 11002 | - | 73078 | 89 | 22.5 | -21.6 | NP_116398 | 5' arm 3' arm | ||
| 10939 | - | 35413 | 89 | 20.5 | -21.6 | NP_116361 | 5' arm 3' arm | ||
| 10785 | + | 111976 | 89 | 19.5 | -21.6 | NP_116418 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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