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| GenBank Identifier | RefSeq Acc. | Name |
| 22091104 | NC_004084.1 | Virus PhiCh1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 16271 | + | 11029 | 90 | 20 | -22.2 | NP_665935 | 5' arm 3' arm | ||
| 16398 | - | 12521 | 88 | 21.5 | -22.2 | NP_665936 | 5' arm 3' arm | ||
| 16303 | + | 26571 | 89 | 20.5 | -22.2 | NP_665954 | 5' arm 3' arm | ||
| 16495 | - | 54603 | 88 | 19 | -22.2 | NP_666008 | 5' arm 3' arm | ||
| 16454 | - | 41298 | 85 | 19.5 | -22.2 | NP_665979 | 5' arm 3' arm | ||
| 16277 | + | 13297 | 87 | 19.5 | -22.2 | NP_665938 | 5' arm 3' arm | ||
| 16276 | + | 12931 | 90 | 22 | -22.4 | NP_665937 | 5' arm 3' arm | ||
| 16336 | + | 44311 | 89 | 20 | -22.4 | NP_665989 | 5' arm 3' arm | ||
| 16299 | + | 23286 | 90 | 19.5 | -22.4 | NP_665952 | 5' arm 3' arm | ||
| 16344 | + | 47510 | 88 | 22.5 | -22.5 | NP_665996 | 5' arm 3' arm | ||
| 16334 | + | 42659 | 90 | 20.5 | -22.6 | NP_665986 | 5' arm 3' arm | ||
| 16302 | + | 25475 | 89 | 24 | -22.6 | NP_665953 | 5' arm 3' arm | ||
| 16461 | - | 43485 | 90 | 20 | -22.6 | NP_665987 | 5' arm 3' arm | ||
| 16353 | + | 51126 | 89 | 19 | -22.6 | 5' arm 3' arm | |||
| 16503 | - | 57631 | 81 | 19 | -22.6 | NP_666013 | 5' arm 3' arm | ||
| 16498 | - | 56637 | 85 | 19 | -22.7 | NP_666012 | 5' arm 3' arm | ||
| 16382 | - | 5593 | 87 | 23.5 | -22.7 | NP_665925 | 5' arm 3' arm | ||
| 16501 | - | 57361 | 90 | 19.5 | -22.7 | NP_666013 | 5' arm 3' arm | ||
| 16415 | - | 23244 | 86 | 19.5 | -22.8 | NP_665951 | 5' arm 3' arm | ||
| 16471 | - | 47597 | 88 | 22 | -22.8 | NP_665996 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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