miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18379 - 11713 90 20 -21.7 NP_817468 5' arm      3' arm
18259 + 7620 90 20 -21.7 NP_817461 5' arm      3' arm
18398 - 16335 89 21.5 -21.8 NP_817472 5' arm      3' arm
18516 - 63567 90 20 -21.8 NP_817556 5' arm      3' arm
18536 - 75435 90 22.5 -21.8 5' arm      3' arm
18372 - 8852 86 19 -21.8 NP_817462 5' arm      3' arm
18273 + 15961 87 22 -21.9 NP_817472 5' arm      3' arm
18350 + 70546 90 23.5 -21.9 NP_817576 5' arm      3' arm
18490 - 52197 89 21 -21.9 NP_817531 5' arm      3' arm
18451 - 39265 89 22.5 -22 NP_817502 5' arm      3' arm
18406 - 20166 90 19 -22 NP_817473 5' arm      3' arm
18530 - 70949 90 19 -22 NP_817577 5' arm      3' arm
18272 + 15838 90 20 -22 NP_817472 5' arm      3' arm
18332 + 61902 89 20 -22.1 NP_817552 5' arm      3' arm
18522 - 67118 86 23 -22.1 NP_817564 5' arm      3' arm
18402 - 19328 90 19 -22.1 NP_817473 5' arm      3' arm
18434 - 30570 90 21 -22.1 NP_817482 5' arm      3' arm
18453 - 39657 89 19.5 -22.1 NP_817502 5' arm      3' arm
18270 + 14596 90 20 -22.2 NP_817472 5' arm      3' arm
18437 - 32175 90 19 -22.2 NP_817483 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.