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GenBank Identifier | RefSeq Acc. | Name |
9635581 | NC_002484.1 | Pseudomonas phage D3 |
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ID | strand | start position | length | sRNA loop score |
core MFE.![]() |
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
8917 | - | 38418 | 90 | 19 | -22.9 | NP_061552 | 5' arm 3' arm | ||
8877 | - | 1424 | 90 | 24 | -22.9 | NP_061498 | 5' arm 3' arm | ||
8837 | + | 28813 | 89 | 20.5 | -22.9 | NP_061534 | 5' arm 3' arm | ||
8846 | + | 32815 | 89 | 19.5 | -22.9 | NP_061540 | 5' arm 3' arm | ||
8897 | - | 14101 | 90 | 23 | -22.9 | NP_061517 | 5' arm 3' arm | ||
8864 | + | 44722 | 73 | 20.5 | -22.9 | NP_061564 | 5' arm 3' arm | ||
8807 | + | 11235 | 90 | 21.5 | -23 | 5' arm 3' arm | |||
8798 | + | 6004 | 87 | 23.5 | -23 | NP_061504 | 5' arm 3' arm | ||
8912 | - | 34027 | 89 | 19 | -23.2 | NP_061542 | 5' arm 3' arm | ||
8830 | + | 25803 | 88 | 19.5 | -23.2 | NP_061527 | 5' arm 3' arm | ||
8901 | - | 17550 | 89 | 21.5 | -23.4 | NP_061522 | 5' arm 3' arm | ||
8833 | + | 27623 | 87 | 19.5 | -23.4 | NP_061531 | 5' arm 3' arm | ||
8933 | - | 52979 | 90 | 20 | -23.5 | NP_061580 | 5' arm 3' arm | ||
8909 | - | 28733 | 88 | 20 | -23.5 | NP_061533 | 5' arm 3' arm | ||
8893 | - | 11517 | 87 | 22 | -23.6 | NP_061515 | 5' arm 3' arm | ||
8924 | - | 45266 | 88 | 20.5 | -23.7 | 5' arm 3' arm | |||
8876 | - | 129 | 90 | 21 | -23.7 | NP_061497 | 5' arm 3' arm | ||
8887 | - | 5278 | 90 | 22.5 | -23.8 | NP_061502 | 5' arm 3' arm | ||
8856 | + | 38980 | 90 | 21.5 | -23.9 | NP_061536 | 5' arm 3' arm | ||
8935 | - | 53958 | 89 | 21.5 | -24.1 | NP_061582 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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