miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
9660	+	134080	89	23.5	-23.1			5' arm      3' arm
9781	-	163381	89	23.5	-23.1			5' arm      3' arm
9622	+	76269	90	21	-23.4	NP_066868		5' arm      3' arm
9746	-	123401	87	20	-23.4	NP_066893		5' arm      3' arm
9598	+	10182	87	20	-23.4	NP_066826		5' arm      3' arm
9717	-	37385	88	20.5	-23.5	NP_066846		5' arm      3' arm
9756	-	130443	89	23	-23.7	NP_066819		5' arm      3' arm
9588	+	3140	89	23	-23.7	NP_066819		5' arm      3' arm
9722	-	57158	87	23.5	-23.8	NP_066857		5' arm      3' arm
9704	-	10409	89	24	-24	NP_066893		5' arm      3' arm
9638	+	123174	89	24	-24	NP_066893		5' arm      3' arm
9718	-	41650	90	19	-24.1	NP_066845		5' arm      3' arm
9594	+	8409	90	26	-24.1	NP_066896		5' arm      3' arm
9634	+	122101	85	19	-24.1			5' arm      3' arm
9708	-	11482	85	19	-24.1			5' arm      3' arm
9750	-	125174	90	26	-24.1	NP_066896		5' arm      3' arm
9773	-	157526	89	19	-24.2	NP_066916		5' arm      3' arm
9618	+	69264	90	23.5	-24.2	NP_066862		5' arm      3' arm
9667	+	139945	89	19	-24.2	NP_066903		5' arm      3' arm
9727	-	68272	89	20	-24.3	NP_066862		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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