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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15797 | + | 108719 | 89 | 19 | -21.1 | YP_214079 | 5' arm 3' arm | ||
| 16178 | - | 177551 | 89 | 21.5 | -21.1 | YP_214122 | 5' arm 3' arm | ||
| 15765 | + | 86240 | 89 | 21.5 | -21.1 | YP_214068 | 5' arm 3' arm | ||
| 16132 | - | 139393 | 90 | 20.5 | -21.1 | YP_214096 | 5' arm 3' arm | ||
| 16038 | - | 73096 | 90 | 20 | -21.1 | 5' arm 3' arm | |||
| 15889 | + | 187782 | 84 | 23 | -21.1 | YP_214131 | 5' arm 3' arm | ||
| 15930 | + | 226064 | 88 | 20 | -21.1 | YP_214167 | 5' arm 3' arm | ||
| 16015 | - | 63668 | 88 | 21.5 | -21.1 | YP_214059 | 5' arm 3' arm | ||
| 16201 | - | 196481 | 87 | 19 | -21.1 | YP_214140 | 5' arm 3' arm | ||
| 15828 | + | 130439 | 87 | 19 | -21.11 | YP_214089 | 5' arm 3' arm | ||
| 16152 | - | 149095 | 87 | 19 | -21.2 | YP_214103 | 5' arm 3' arm | ||
| 16224 | - | 212785 | 90 | 22.5 | -21.2 | YP_214153 | 5' arm 3' arm | ||
| 16139 | - | 141494 | 89 | 19.5 | -21.2 | YP_214098 | 5' arm 3' arm | ||
| 15941 | - | 9523 | 83 | 22 | -21.2 | YP_214017 | 5' arm 3' arm | ||
| 15687 | + | 29907 | 90 | 20 | -21.2 | YP_214036 | 5' arm 3' arm | ||
| 15816 | + | 122549 | 84 | 21.5 | -21.2 | YP_214087 | 5' arm 3' arm | ||
| 16012 | - | 61909 | 85 | 21 | -21.2 | YP_214058 | 5' arm 3' arm | ||
| 15664 | + | 6170 | 90 | 21.5 | -21.3 | YP_214014 | 5' arm 3' arm | ||
| 15804 | + | 116415 | 88 | 19.5 | -21.3 | YP_214084 | 5' arm 3' arm | ||
| 15853 | + | 147569 | 89 | 21.5 | -21.3 | YP_214102 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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