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GenBank Identifier | RefSeq Acc. | Name |
50313241 | NC_001491.2 | Equid herpesvirus 1 |
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ID | strand | start position | length | sRNA loop score |
core MFE.![]() |
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
2732 | - | 5168 | 89 | 20.5 | -23.9 | YP_053050 | 5' arm 3' arm | ||
2737 | - | 14011 | 88 | 21.5 | -24 | YP_053057 | 5' arm 3' arm | ||
2709 | + | 123283 | 89 | 20 | -24 | YP_053122 | 5' arm 3' arm | ||
2819 | - | 139877 | 89 | 20 | -24 | YP_053122 | 5' arm 3' arm | ||
2750 | - | 30920 | 79 | 19 | -24.1 | YP_053066 | 5' arm 3' arm | ||
2781 | - | 81651 | 88 | 23 | -24.1 | YP_053088 | 5' arm 3' arm | ||
2734 | - | 8640 | 88 | 20 | -24.2 | YP_053052 | 5' arm 3' arm | ||
2743 | - | 18882 | 88 | 19.5 | -24.3 | YP_053059 | 5' arm 3' arm | ||
2642 | + | 31075 | 89 | 19 | -24.4 | YP_053066 | 5' arm 3' arm | ||
2708 | + | 120583 | 90 | 19 | -24.7 | 5' arm 3' arm | |||
2820 | - | 142577 | 90 | 19 | -24.7 | 5' arm 3' arm | |||
2684 | + | 91468 | 86 | 23 | -24.7 | YP_053046 | 5' arm 3' arm | ||
2698 | + | 113884 | 90 | 23.5 | -24.73 | 5' arm 3' arm | |||
2829 | - | 149276 | 90 | 23.5 | -24.73 | 5' arm 3' arm | |||
2757 | - | 39026 | 88 | 21.5 | -24.8 | YP_053069 | 5' arm 3' arm | ||
2735 | - | 10774 | 81 | 19.5 | -24.8 | YP_053053 | 5' arm 3' arm | ||
2755 | - | 37003 | 86 | 20.5 | -24.9 | YP_053069 | 5' arm 3' arm | ||
2761 | - | 43240 | 88 | 20 | -24.9 | YP_053069 | 5' arm 3' arm | ||
2767 | - | 57270 | 90 | 22.5 | -24.9 | YP_053076 | 5' arm 3' arm | ||
2621 | + | 81 | 89 | 20 | -25.1 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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