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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 11046 | - | 95299 | 90 | 21 | -21.9 | NP_116408 | 5' arm 3' arm | ||
| 10788 | + | 113820 | 90 | 22.5 | -21.9 | NP_116420 | 5' arm 3' arm | ||
| 11037 | - | 92246 | 88 | 20.5 | -21.9 | NP_116407 | 5' arm 3' arm | ||
| 10698 | + | 222 | 90 | 23.5 | -21.9 | NP_116330 | 5' arm 3' arm | ||
| 10886 | + | 173690 | 90 | 19.5 | -21.9 | 5' arm 3' arm | |||
| 10914 | + | 193466 | 86 | 23.5 | -21.9 | NP_116483 | 5' arm 3' arm | ||
| 10883 | + | 172714 | 89 | 20 | -21.9 | NP_116464 | 5' arm 3' arm | ||
| 10757 | + | 85847 | 87 | 23.5 | -21.9 | 5' arm 3' arm | |||
| 10750 | + | 72805 | 88 | 19.5 | -21.9 | NP_116398 | 5' arm 3' arm | ||
| 10828 | + | 135373 | 89 | 21 | -21.91 | NP_116435 | 5' arm 3' arm | ||
| 10872 | + | 164141 | 86 | 20.5 | -22 | NP_116454 | 5' arm 3' arm | ||
| 10791 | + | 114693 | 90 | 21 | -22 | NP_116420 | 5' arm 3' arm | ||
| 11064 | - | 101681 | 89 | 21 | -22 | NP_116411 | 5' arm 3' arm | ||
| 11141 | - | 188916 | 90 | 21.5 | -22 | NP_116479 | 5' arm 3' arm | ||
| 10783 | + | 110459 | 89 | 21.5 | -22 | 5' arm 3' arm | |||
| 11110 | - | 151349 | 90 | 19.5 | -22 | NP_116445 | 5' arm 3' arm | ||
| 10853 | + | 151912 | 80 | 19.5 | -22 | NP_116445 | 5' arm 3' arm | ||
| 10720 | + | 32336 | 86 | 20.5 | -22.1 | NP_116359 | 5' arm 3' arm | ||
| 10856 | + | 154913 | 90 | 20 | -22.1 | NP_116446 | 5' arm 3' arm | ||
| 10984 | - | 63172 | 89 | 21.5 | -22.1 | NP_116386 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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