miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18340 + 65843 90 20 -22.8 NP_817562 5' arm      3' arm
18481 - 50510 90 19.5 -22.8 NP_817529 5' arm      3' arm
18448 - 36683 90 20 -22.8 NP_817495 5' arm      3' arm
18443 - 35370 90 19 -22.8 NP_817491 5' arm      3' arm
18339 + 65694 90 20 -22.9 NP_817562 5' arm      3' arm
18480 - 50221 89 20.5 -22.9 NP_817528 5' arm      3' arm
18528 - 69574 87 20.5 -22.9 NP_817575 5' arm      3' arm
18337 + 64105 88 19.5 -22.9 NP_817558 5' arm      3' arm
18354 + 71885 87 20.5 -23 NP_817580 5' arm      3' arm
18343 + 67219 90 20 -23.1 NP_817564 5' arm      3' arm
18506 - 58566 86 22.5 -23.1 NP_817545 5' arm      3' arm
18258 + 7504 89 21.5 -23.1 NP_817461 5' arm      3' arm
18432 - 30148 89 20 -23.2 NP_817481 5' arm      3' arm
18399 - 16649 90 22 -23.2 NP_817472 5' arm      3' arm
18509 - 59669 88 22 -23.2 NP_817548 5' arm      3' arm
18404 - 19893 89 19 -23.2 NP_817473 5' arm      3' arm
18369 - 7740 89 19 -23.2 NP_817461 5' arm      3' arm
18420 - 24851 88 21 -23.2 NP_817476 5' arm      3' arm
18278 + 18468 86 21 -23.3 NP_817472 5' arm      3' arm
18468 - 45138 90 22.5 -23.4 NP_817516 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.