miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
47835019 NC_004333.2 Burkholderia cepacia phage Bcep781

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17212 - 44895 90 22.5 -23.7 NP_705685 5' arm      3' arm
17042 + 21034 90 20.5 -23.7 NP_705653 5' arm      3' arm
17209 - 43467 86 22.5 -23.8 NP_705683 5' arm      3' arm
17008 + 6297 87 19.5 -23.8 NP_705636 5' arm      3' arm
17009 + 7044 89 21.5 -23.8 NP_705637 5' arm      3' arm
17103 + 47820 89 21 -23.9 5' arm      3' arm
17051 + 23252 90 20.5 -23.9 NP_705657 5' arm      3' arm
17055 + 24866 88 20 -23.9 NP_705659 5' arm      3' arm
17020 + 9949 89 24 -23.9 NP_705640 5' arm      3' arm
17170 - 25630 87 20 -24 NP_705659 5' arm      3' arm
17089 + 40325 88 19 -24.04 YP_022747 5' arm      3' arm
17151 - 17309 90 19 -24.1 NP_705646 5' arm      3' arm
17154 - 18364 88 23 -24.1 NP_705647 5' arm      3' arm
17128 - 9268 90 20.5 -24.1 NP_705640 5' arm      3' arm
17218 - 46920 89 21.5 -24.1 NP_705687 5' arm      3' arm
17206 - 42204 87 19.5 -24.2 NP_705681 5' arm      3' arm
17107 - 1178 88 19.5 -24.2 YP_022739 5' arm      3' arm
17134 - 10931 89 21.5 -24.2 NP_705641 5' arm      3' arm
17057 + 25736 85 22.5 -24.3 NP_705659 5' arm      3' arm
17046 + 22158 88 20 -24.4 NP_705655 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.