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| GenBank Identifier | RefSeq Acc. | Name |
| 48697190 | NC_005887.1 | Burkholderia cepacia complex phage BcepC6B |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28052 | + | 26993 | 86 | 19 | -24.8 | YP_024948 | 5' arm 3' arm | ||
| 28163 | - | 28464 | 90 | 21.5 | -24.9 | YP_024950 | 5' arm 3' arm | ||
| 28168 | - | 31338 | 90 | 20 | -24.9 | YP_024952 | 5' arm 3' arm | ||
| 28090 | + | 37877 | 90 | 24.5 | -25 | 5' arm 3' arm | |||
| 28126 | - | 11631 | 90 | 21 | -25 | YP_024934 | 5' arm 3' arm | ||
| 28161 | - | 27512 | 84 | 19.5 | -25.1 | YP_024948 | 5' arm 3' arm | ||
| 28138 | - | 16231 | 86 | 24 | -25.1 | YP_024936 | 5' arm 3' arm | ||
| 28042 | + | 22566 | 87 | 21 | -25.1 | YP_024941 | 5' arm 3' arm | ||
| 28049 | + | 26155 | 90 | 21.5 | -25.1 | YP_024948 | 5' arm 3' arm | ||
| 28081 | + | 35119 | 90 | 22 | -25.2 | YP_024959 | 5' arm 3' arm | ||
| 28017 | + | 10946 | 90 | 24.5 | -25.3 | YP_024933 | 5' arm 3' arm | ||
| 28100 | + | 41437 | 90 | 21.5 | -25.3 | YP_024966 | 5' arm 3' arm | ||
| 28073 | + | 32276 | 89 | 21 | -25.4 | YP_024953 | 5' arm 3' arm | ||
| 28115 | - | 6234 | 90 | 21 | -25.4 | YP_024928 | 5' arm 3' arm | ||
| 28151 | - | 23405 | 85 | 20.5 | -25.4 | YP_024943 | 5' arm 3' arm | ||
| 28110 | - | 4686 | 89 | 22 | -25.5 | YP_024925 | 5' arm 3' arm | ||
| 28006 | + | 4431 | 89 | 21.5 | -25.5 | YP_024925 | 5' arm 3' arm | ||
| 28025 | + | 15233 | 77 | 20 | -25.5 | YP_024936 | 5' arm 3' arm | ||
| 28024 | + | 14329 | 87 | 20 | -25.6 | YP_024936 | 5' arm 3' arm | ||
| 28021 | + | 13977 | 90 | 20.5 | -25.6 | YP_024935 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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