miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
29070	-	101279	89	19	-22	YP_067982		5' arm      3' arm
28764	+	38289	89	19.5	-22	YP_067945		5' arm      3' arm
28809	+	69348	88	20	-22	YP_067960		5' arm      3' arm
28794	+	54690	90	21	-22	YP_067951		5' arm      3' arm
29138	-	157349	89	19.5	-22	YP_068012		5' arm      3' arm
29044	-	83866	90	22	-22	YP_067968		5' arm      3' arm
28919	+	159644	89	21.5	-22	YP_068012		5' arm      3' arm
28939	-	7572	89	20.5	-22			5' arm      3' arm
29009	-	38627	88	21	-22	YP_067946		5' arm      3' arm
28921	+	160290	88	20.5	-22	YP_068012		5' arm      3' arm
29010	-	43189	89	19	-22.1	YP_067949		5' arm      3' arm
29111	-	134096	89	21.5	-22.1			5' arm      3' arm
29027	-	62035	83	20	-22.1	YP_067955		5' arm      3' arm
29040	-	81873	90	20.5	-22.1	YP_067967		5' arm      3' arm
28759	+	30498	90	20.5	-22.1			5' arm      3' arm
29104	-	129623	90	22.5	-22.2			5' arm      3' arm
28877	+	139394	89	20.5	-22.2			5' arm      3' arm
28797	+	59902	88	19.5	-22.2	YP_067953		5' arm      3' arm
28730	+	3858	90	19	-22.2	YP_067940		5' arm      3' arm
28937	-	5181	87	20.5	-22.2	YP_067940		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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