miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38638196 NC_005264.1 Psittacid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
24469 + 103412 89 19 -21.6 NP_944431 5' arm      3' arm
24385 + 42424 88 21.5 -21.62 NP_944401 5' arm      3' arm
24636 - 85985 90 19 -21.7 NP_944420 5' arm      3' arm
24665 - 101870 87 22 -21.7 NP_944430 5' arm      3' arm
24512 + 142175 87 22 -21.7 NP_944447 5' arm      3' arm
24446 + 84213 88 22.5 -21.7 NP_944419 5' arm      3' arm
24638 - 86699 88 20.5 -21.8 NP_944420 5' arm      3' arm
24471 + 103905 90 21.5 -21.8 NP_944431 5' arm      3' arm
24342 + 7252 88 20.5 -21.8 NP_944382 5' arm      3' arm
24465 + 96804 90 19.5 -21.8 NP_944425 5' arm      3' arm
24760 - 160509 87 22 -21.8 NP_944441 5' arm      3' arm
24516 + 146891 89 20.5 -21.8 NP_944450 5' arm      3' arm
24597 - 49450 86 19 -21.8 NP_944403 5' arm      3' arm
24492 + 121663 87 22 -21.8 NP_944441 5' arm      3' arm
24363 + 26622 86 19 -21.9 5' arm      3' arm
24431 + 68152 85 21 -21.9 NP_944410 5' arm      3' arm
24395 + 46635 90 21.5 -21.9 NP_944402 5' arm      3' arm
24737 - 144048 90 20 -21.9 5' arm      3' arm
24712 - 131016 88 19 -22 5' arm      3' arm
24541 + 159717 90 19.5 -22 NP_944452 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.