miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
2815	-	137203	87	19	-25.2	YP_053120		5' arm      3' arm
2772	-	61133	89	22	-25.2	YP_053077		5' arm      3' arm
2792	-	106263	86	19	-25.3	YP_053103		5' arm      3' arm
2715	+	136880	86	20.5	-25.3	YP_053120		5' arm      3' arm
2645	+	34681	89	20	-25.4	YP_053068		5' arm      3' arm
2662	+	62397	89	21	-25.4	YP_053078		5' arm      3' arm
2673	+	79725	86	19.5	-25.4	YP_053088		5' arm      3' arm
2694	+	106201	87	21.5	-25.5	YP_053103		5' arm      3' arm
2630	+	5550	87	24	-25.5	YP_053050		5' arm      3' arm
2628	+	5282	90	22	-25.7	YP_053050		5' arm      3' arm
2623	+	657	89	19	-25.9			5' arm      3' arm
2636	+	12090	88	20.5	-26	YP_053055		5' arm      3' arm
2713	+	131221	87	20.5	-26.1	YP_053115		5' arm      3' arm
2710	+	123690	89	22.5	-26.3			5' arm      3' arm
2818	-	139470	89	22.5	-26.3			5' arm      3' arm
2807	-	121809	90	22.5	-26.4	YP_053109		5' arm      3' arm
2721	+	142093	89	22.5	-26.4			5' arm      3' arm
2720	+	141351	90	22.5	-26.4	YP_053109		5' arm      3' arm
2651	+	49535	77	19.5	-26.4	YP_053073		5' arm      3' arm
2806	-	121067	89	22.5	-26.4			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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