miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
29109	-	133631	86	21.5	-22.9			5' arm      3' arm
28788	+	51281	89	20	-23	YP_067950		5' arm      3' arm
28785	+	50325	86	21.5	-23	YP_067950		5' arm      3' arm
28789	+	51371	89	20	-23	YP_067950		5' arm      3' arm
28779	+	47717	90	22	-23	YP_067950		5' arm      3' arm
28940	-	7665	89	31	-23			5' arm      3' arm
28986	-	26700	81	19	-23.1			5' arm      3' arm
28762	+	36661	81	26	-23.1		rlcv-mir-rL1-2	3' arm
28906	+	150282	90	22	-23.1	YP_068007		5' arm      3' arm
29114	-	138895	87	21	-23.1			5' arm      3' arm
28825	+	93351	90	19.5	-23.1	YP_067977		5' arm      3' arm
28770	+	41892	88	19	-23.1	YP_067948		5' arm      3' arm
29007	-	35679	82	19.5	-23.2			5' arm      3' arm
28881	+	141098	84	23	-23.2		rlcv-mir-rL1-10	3' arm
28731	+	4212	88	21	-23.3	YP_067940		5' arm      3' arm
28866	+	133683	81	26	-23.3		rlcv-mir-rL1-6	5' arm      3' arm
29074	-	105911	90	19	-23.3	YP_067986		5' arm      3' arm
29087	-	115234	86	19.5	-23.3	YP_067994		5' arm      3' arm
28934	-	3723	89	21	-23.3	YP_067940		5' arm      3' arm
28900	+	148112	90	20	-23.4	YP_068006		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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