miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
56692908 NC_006552.1 Pseudomonas aeruginosa phage F116

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
30732 + 16704 90 25.5 -23.4 YP_164289 5' arm      3' arm
30734 + 17343 85 25 -28.9 5' arm      3' arm
30728 + 15051 90 23 -19.4 5' arm      3' arm
30733 + 16814 90 23 -19.4 5' arm      3' arm
30725 + 14011 90 22.5 -22.9 YP_164283 5' arm      3' arm
30730 + 16334 87 22.5 -27.2 YP_164288 5' arm      3' arm
30726 + 14319 90 21.5 -22.8 YP_164283 5' arm      3' arm
30721 + 11755 85 20.5 -22.5 YP_164280 5' arm      3' arm
30720 + 11582 89 20.5 -20.6 YP_164280 5' arm      3' arm
30722 + 12758 89 21.5 -25.6 5' arm      3' arm
30712 + 8460 88 21 -25 YP_164275 5' arm      3' arm
30699 + 5361 89 20.5 -27.3 YP_164273 5' arm      3' arm
30704 + 6606 87 20.5 -27.2 YP_164274 5' arm      3' arm
30701 + 5952 90 20 -21.9 YP_164274 5' arm      3' arm
30706 + 6898 88 19 -32.3 YP_164274 5' arm      3' arm
30713 + 8725 90 19 -24.4 YP_164276 5' arm      3' arm
30715 + 9386 90 19 -26.8 YP_164277 5' arm      3' arm
30723 + 12878 89 25.5 -33.4 YP_164282 5' arm      3' arm
30716 + 10335 86 25 -33.3 YP_164278 5' arm      3' arm
30724 + 13022 84 22.5 -23.8 YP_164282 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.