miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
8829	+	24931	90	23	-22.8	NP_061526		5' arm      3' arm
8830	+	25803	88	19.5	-23.2	NP_061527		5' arm      3' arm
8832	+	26651	90	19	-24.6	NP_061530		5' arm      3' arm
8836	+	28452	89	27.5	-35.9			5' arm      3' arm
8835	+	27953	87	24	-29.4	NP_061531		5' arm      3' arm
8838	+	29444	87	22	-20	NP_061536		5' arm      3' arm
8841	+	30790	89	21.5	-24.3	NP_597918		5' arm      3' arm
8826	+	19351	89	20.5	-20.4	NP_061523		5' arm      3' arm
8828	+	20690	89	22	-19.6	NP_061523		5' arm      3' arm
8823	+	17499	88	19	-26.8	NP_061522		5' arm      3' arm
8824	+	17718	90	22.5	-22.3	NP_061522		5' arm      3' arm
8818	+	16512	89	22	-24.1	NP_061522		5' arm      3' arm
8817	+	16325	84	21	-22.2	NP_061522		5' arm      3' arm
8819	+	16710	90	21	-20.4	NP_061522		5' arm      3' arm
8814	+	14899	89	20.5	-27.4	NP_061519		5' arm      3' arm
8815	+	15539	90	20.5	-27.6	NP_061521		5' arm      3' arm
8816	+	15727	89	20.5	-19.7	NP_061521		5' arm      3' arm
8822	+	17266	90	20	-21.7	NP_061522		5' arm      3' arm
8820	+	16801	87	19.5	-22.2	NP_061522		5' arm      3' arm
8821	+	16910	82	19.5	-22.2	NP_061522		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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