miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18300 + 31974 88 22.5 -20.4 NP_817483 5' arm      3' arm
18309 + 36363 89 24 -19.91 NP_817494 5' arm      3' arm
18295 + 29553 88 19 -25.9 NP_817479 5' arm      3' arm
18299 + 30654 90 19.5 -24.1 NP_817482 5' arm      3' arm
18298 + 30325 90 20.5 -27.3 5' arm      3' arm
18296 + 29894 89 20.5 -22.7 5' arm      3' arm
18294 + 29395 90 20.5 -26.9 NP_817479 5' arm      3' arm
18292 + 27975 87 20.5 -21 NP_817477 5' arm      3' arm
18297 + 30081 82 21 -25.2 NP_817481 5' arm      3' arm
18304 + 34027 90 22 -26.1 NP_817487 5' arm      3' arm
18308 + 36129 90 21 -21.5 NP_817494 5' arm      3' arm
18313 + 38943 89 20 -22.6 NP_817502 5' arm      3' arm
18312 + 38070 85 21 -20.2 5' arm      3' arm
18311 + 37541 90 23.5 -25.1 NP_817500 5' arm      3' arm
18306 + 34993 89 19 -20.4 NP_817490 5' arm      3' arm
18301 + 32960 89 19 -28.2 NP_817485 5' arm      3' arm
18303 + 33542 88 19.5 -26 NP_817486 5' arm      3' arm
18302 + 33054 87 19.5 -22.5 NP_817485 5' arm      3' arm
18307 + 35856 88 20 -21.5 5' arm      3' arm
18305 + 34602 88 20.5 -25.6 NP_817489 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.