miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38640309 NC_005262.1 Burkholderia cepacia phage Bcep22

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23913 + 26273 86 20.5 -23 NP_944278 5' arm      3' arm
23912 + 26062 87 21 -29.9 NP_944278 5' arm      3' arm
23916 + 27192 90 22.5 -20 NP_944279 5' arm      3' arm
23906 + 19815 89 19 -29.6 NP_944262 5' arm      3' arm
23909 + 22817 88 20 -22.2 NP_944268 5' arm      3' arm
23908 + 21240 90 20 -19.8 NP_944265 5' arm      3' arm
23902 + 18653 87 20 -23.4 NP_944261 5' arm      3' arm
23907 + 20605 88 21 -20.7 NP_944264 5' arm      3' arm
23905 + 19476 87 21.5 -23.6 NP_944261 5' arm      3' arm
23910 + 24978 90 19 -23.1 NP_944277 5' arm      3' arm
23911 + 25801 90 19 -22.4 NP_944278 5' arm      3' arm
23923 + 32282 90 21.5 -24.2 NP_944284 5' arm      3' arm
23926 + 33995 90 22 -22.4 NP_944287 5' arm      3' arm
23917 + 28193 89 19.5 -21.1 NP_944280 5' arm      3' arm
23920 + 29553 89 20 -20.1 NP_944280 5' arm      3' arm
23919 + 28446 90 20 -25.3 NP_944280 5' arm      3' arm
23918 + 28286 89 20.5 -28.9 NP_944280 5' arm      3' arm
23921 + 31398 89 21.5 -28.3 5' arm      3' arm
23915 + 26864 86 19 -20.4 5' arm      3' arm
23914 + 26400 90 19 -23.8 NP_944278 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.