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| GenBank Identifier | RefSeq Acc. | Name |
| 28373214 | NC_001347.2 | Human herpesvirus 5 (laboratory strain AD169) |
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| ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF |
Known viral miRNA
|
Match to own genomic region# | Target prediction with RNAhybrid |
| 1607 | + | 73935 | 88 | 21 | -24.5 | NP_039984 | 5' arm 3' arm | ||
| 1608 | + | 74313 | 86 | 20.5 | -22.8 | NP_039985 | 5' arm 3' arm | ||
| 1609 | + | 77371 | 89 | 21.5 | -21.9 | NP_039987 | 5' arm 3' arm | ||
| 1610 | + | 79308 | 90 | 20.5 | -31.2 | NP_039988 | 5' arm 3' arm | ||
| 1594 | + | 53547 | 88 | 21 | -20.1 | NP_039974 | 5' arm 3' arm | ||
| 1590 | + | 51374 | 89 | 21 | -23.9 | NP_039972 | 5' arm 3' arm | ||
| 1573 | + | 41073 | 89 | 20 | -29.1 | NP_039966 | 5' arm 3' arm | ||
| 1576 | + | 41694 | 89 | 20 | -25.8 | NP_039966 | 5' arm 3' arm | ||
| 1575 | + | 41341 | 82 | 19.5 | -26.1 | NP_039966 | 5' arm 3' arm | ||
| 1578 | + | 42587 | 89 | 19 | -23.5 | NP_039966 | 5' arm 3' arm | ||
| 1589 | + | 49490 | 85 | 26.5 | -28.7 | ||||
| 1587 | + | 48666 | 90 | 23.5 | -20.5 | NP_039970 | 5' arm 3' arm | ||
| 1586 | + | 48524 | 90 | 22 | -24.2 | NP_039970 | 5' arm 3' arm | ||
| 1582 | + | 46117 | 89 | 20.5 | -22.2 | NP_039969 | 5' arm 3' arm | ||
| 1584 | + | 46959 | 89 | 20.5 | -26.4 | NP_039969 | 5' arm 3' arm | ||
| 1585 | + | 47735 | 87 | 20 | -28.6 | NP_039969 | 5' arm 3' arm | ||
| 1583 | + | 46376 | 90 | 19 | -20.4 | NP_039969 | 5' arm 3' arm | ||
| 1588 | + | 49320 | 90 | 19 | -19.7 | NP_039970 | 5' arm 3' arm | ||
| 1591 | + | 52282 | 86 | 22.5 | -31.5 | NP_039971 | 5' arm 3' arm | ||
| 1592 | + | 52495 | 87 | 21.5 | -21.7 | NP_039971 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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