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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28759 | + | 30498 | 90 | 20.5 | -22.1 | 5' arm 3' arm | |||
| 29073 | - | 104530 | 88 | 20.5 | -19.6 | YP_067985 | 5' arm 3' arm | ||
| 29100 | - | 127735 | 90 | 20.5 | -20 | YP_068000 | 5' arm 3' arm | ||
| 29081 | - | 109738 | 88 | 20.5 | -23.4 | YP_067989 | 5' arm 3' arm | ||
| 29088 | - | 118638 | 90 | 20.5 | -24.4 | YP_067994 | 5' arm 3' arm | ||
| 28818 | + | 86321 | 90 | 20.5 | -24.1 | YP_067970 | 5' arm 3' arm | ||
| 28819 | + | 86688 | 86 | 20.5 | -19.7 | YP_067970 | 5' arm 3' arm | ||
| 28822 | + | 88621 | 87 | 20.5 | -21.2 | YP_067972 | 5' arm 3' arm | ||
| 28877 | + | 139394 | 89 | 20.5 | -22.2 | 5' arm 3' arm | |||
| 29042 | - | 82189 | 84 | 20.5 | -30.5 | YP_067967 | 5' arm 3' arm | ||
| 29127 | - | 148701 | 87 | 20.5 | -23.9 | YP_068006 | 5' arm 3' arm | ||
| 28826 | + | 93520 | 90 | 20.5 | -25 | YP_067977 | 5' arm 3' arm | ||
| 29126 | - | 146847 | 90 | 20.5 | -21.1 | YP_068005 | 5' arm 3' arm | ||
| 28783 | + | 49675 | 71 | 20.5 | -20.9 | YP_067950 | 5' arm 3' arm | ||
| 28937 | - | 5181 | 87 | 20.5 | -22.2 | YP_067940 | 5' arm 3' arm | ||
| 28840 | + | 106440 | 90 | 20.5 | -21.5 | YP_067986 | 5' arm 3' arm | ||
| 29083 | - | 111639 | 88 | 20.5 | -29.7 | YP_067987 | 5' arm 3' arm | ||
| 28933 | - | 2068 | 88 | 21 | -21.7 | YP_067940 | 5' arm 3' arm | ||
| 28846 | + | 113714 | 89 | 21 | -20.6 | YP_067992 | 5' arm 3' arm | ||
| 29009 | - | 38627 | 88 | 21 | -22 | YP_067946 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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