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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 16134 | - | 140261 | 90 | 19 | -35.9 | YP_214098 | 5' arm 3' arm | ||
| 16097 | - | 111927 | 87 | 19 | -20.9 | YP_214081 | 5' arm 3' arm | ||
| 15741 | + | 68800 | 89 | 19 | -25.3 | 5' arm 3' arm | |||
| 15967 | - | 32663 | 90 | 19 | -20.59 | YP_214040 | 5' arm 3' arm | ||
| 16001 | - | 53554 | 89 | 19 | -20.1 | YP_214052 | 5' arm 3' arm | ||
| 16131 | - | 139242 | 90 | 19 | -23.9 | YP_214096 | 5' arm 3' arm | ||
| 15926 | + | 225062 | 86 | 19 | -20.3 | YP_214166 | 5' arm 3' arm | ||
| 16023 | - | 65742 | 90 | 19 | -20.3 | 5' arm 3' arm | |||
| 15682 | + | 28325 | 90 | 19 | -20 | YP_214034 | 5' arm 3' arm | ||
| 15785 | + | 97547 | 90 | 19.5 | -19.4 | YP_214071 | 5' arm 3' arm | ||
| 16213 | - | 202616 | 87 | 19.5 | -28.3 | YP_214143 | 5' arm 3' arm | ||
| 16228 | - | 222967 | 88 | 19.5 | -20.5 | YP_214164 | 5' arm 3' arm | ||
| 16214 | - | 202884 | 87 | 19.5 | -23.8 | YP_214144 | 5' arm 3' arm | ||
| 15782 | + | 96397 | 90 | 19.5 | -23.4 | YP_214071 | 5' arm 3' arm | ||
| 15685 | + | 29360 | 89 | 19.5 | -20.4 | YP_214035 | 5' arm 3' arm | ||
| 15713 | + | 53490 | 90 | 19.5 | -22.8 | YP_214052 | 5' arm 3' arm | ||
| 15686 | + | 29471 | 89 | 19.5 | -23.5 | YP_214035 | 5' arm 3' arm | ||
| 15852 | + | 146834 | 90 | 19.5 | -27.8 | YP_214102 | 5' arm 3' arm | ||
| 15807 | + | 118107 | 89 | 19.5 | -28.2 | YP_214085 | 5' arm 3' arm | ||
| 15688 | + | 30371 | 86 | 19.5 | -27.2 | YP_214035 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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