miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18260 + 7930 89 20 -19.4 NP_817461 5' arm      3' arm
18471 - 45774 90 20 -21.2 NP_817517 5' arm      3' arm
18247 + 162 89 20 -25.2 5' arm      3' arm
18272 + 15838 90 20 -22 NP_817472 5' arm      3' arm
18485 - 51271 90 20 -23.8 NP_817531 5' arm      3' arm
18275 + 16521 86 20 -26.2 NP_817472 5' arm      3' arm
18419 - 24542 90 20 -27 NP_817476 5' arm      3' arm
18307 + 35856 88 20 -21.5 5' arm      3' arm
18432 - 30148 89 20 -23.2 NP_817481 5' arm      3' arm
18448 - 36683 90 20 -22.8 NP_817495 5' arm      3' arm
18287 + 25465 88 20 -34.2 NP_817477 5' arm      3' arm
18445 - 35612 90 20 -21.5 NP_817491 5' arm      3' arm
18436 - 31684 90 20 -20.9 NP_817482 5' arm      3' arm
18456 - 40587 88 20 -24.3 NP_817504 5' arm      3' arm
18321 + 51608 88 20 -27.3 NP_817531 5' arm      3' arm
18325 + 54770 90 20 -23.6 NP_817538 5' arm      3' arm
18326 + 56047 87 20 -25.5 NP_817542 5' arm      3' arm
18327 + 56909 90 20 -26.9 NP_817542 5' arm      3' arm
18328 + 58235 86 20 -25.1 NP_817544 5' arm      3' arm
18329 + 58747 90 20 -23.6 NP_817546 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.