miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9625433 NC_001335.1 Mycobacterium phage L5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
1523 - 48875 90 20.5 -20.9 NP_039748 5' arm      3' arm
1522 - 48501 88 20.5 -19.4 NP_039746 5' arm      3' arm
1337 + 5932 90 20.5 -27 NP_039676 5' arm      3' arm
1516 - 43312 89 20.5 -22.9 NP_039733 5' arm      3' arm
1361 + 19104 88 20.5 -19.7 NP_039691 5' arm      3' arm
1465 - 13858 90 20.5 -27.5 NP_039685 5' arm      3' arm
1393 + 36149 83 20.5 -28.1 5' arm      3' arm
1385 + 33037 89 20.5 -20.4 NP_039714 5' arm      3' arm
1430 - 1812 80 20.5 -19.5 NP_039669 5' arm      3' arm
1500 - 34383 88 20.5 -20.2 NP_039714 5' arm      3' arm
1436 - 3290 90 20.5 -21.9 NP_039673 5' arm      3' arm
1368 + 23824 87 20.5 -25.2 NP_039696 5' arm      3' arm
1472 - 16384 88 20.5 -33.7 NP_039690 5' arm      3' arm
1363 + 19440 87 20.5 -28.7 NP_039692 5' arm      3' arm
1439 - 4366 86 20.5 -24.8 5' arm      3' arm
1362 + 19291 90 20.5 -22.3 NP_039691 5' arm      3' arm
1509 - 40392 88 20.5 -27.5 5' arm      3' arm
1483 - 21928 89 20.5 -21.1 NP_039694 5' arm      3' arm
1435 - 3113 87 20.5 -22.2 NP_039672 5' arm      3' arm
1511 - 41103 89 20.5 -22 NP_039729 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.